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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
Assay category
173
DNA binding
Target of assay
346
transcription factor
173
histone modification
172
histone
129
control
87
broad histone mark
85
narrow histone mark
82
recombinant protein
62
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
38
October, 2019
36
May, 2019
33
August, 2017
27
May, 2020
17
December, 2017
16
November, 2017
6
August, 2021
Available data
150
bam
150
bigWig
146
bed narrowPeak
100
bigBed narrowPeak
58
tagAlign
46
fastq
17
bed broadPeak
17
bigBed broadPeak
3
bed bed3+
Organism
173
Homo sapiens
Biosample type
124
tissue
19
primary cell
18
cell line
12
in vitro differentiated cells
Organ
187
brain
151
pancreas
103
liver
97
heart
93
epithelium
78
connective tissue
71
vasculature
70
blood vessel
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
173
AMP
Genome assembly (visualization)
150
hg19
135
GRCh38
Lab
170
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
files.file_type!
vcf
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
tissue
liver
65
tibial artery
18
ascending aorta
12
aorta
11
thoracic aorta
11
+ See 2 more…
primary cell
endothelial cell of umbilical vein
15
hepatocyte
3
brain microvascular endothelial cell
1
cell line
HepG2
18
in vitro differentiated cells
hepatocyte
12
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