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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
444
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
444
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
82
recombinant protein
76
control
57
RNA binding protein
39
histone modification
38
histone
23
chromatin remodeller
22
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
302
November, 2017
143
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
February, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
615
Homo sapiens
Biosample type
354
cell line
238
tissue
15
in vitro differentiated cells
8
primary cell
Organ
679
pancreas
615
liver
593
connective tissue
442
adipose tissue
310
epithelium
205
heart
179
vasculature
174
blood vessel
144
kidney
143
brain
114
limb
96
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
Project
615
AMP
Genome assembly (visualization)
543
hg19
500
GRCh38
Lab
615
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
615 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
347
5
1
1
tissue
liver
72
147
2
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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