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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
159
total RNA-seq
3
ATAC-seq
3
DNase-seq
3
small RNA-seq
1
WGBS
Assay category
510
DNA binding
162
Transcription
6
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
June, 2019
1
February, 2021
1
March, 2020
Available data
679
bam
620
bigWig
465
fastq
439
bed narrowPeak
356
bigBed narrowPeak
174
tsv
86
tagAlign
61
bed broadPeak
61
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
679
Homo sapiens
Biosample type
366
cell line
288
tissue
15
in vitro differentiated cells
10
primary cell
Organ
685
pancreas
679
liver
575
connective tissue
441
adipose tissue
297
epithelium
213
brain
178
vasculature
176
heart
175
blood vessel
100
artery
82
limb
66
bone element
63
kidney
60
blood
60
bodily fluid
42
nerve
36
embryo
24
spleen
20
vein
14
musculature of body
8
skeleton
1
pericardium
1
pituitary gland
Project
679
AMP
Genome assembly (visualization)
583
hg19
529
GRCh38
Lab
679
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2019
BIOSAMPLE
ASSAY
679 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
Liver fetal (hepatocyte)
1
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