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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
505
ChIP-seq
158
total RNA-seq
5
DNase-seq
3
small RNA-seq
2
ATAC-seq
1
WGBS
Assay category
505
DNA binding
161
Transcription
7
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
75
histone modification
74
histone
57
RNA binding protein
48
narrow histone mark
26
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
7
July, 2019
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
674
bam
616
bigWig
465
fastq
435
bed narrowPeak
358
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
674
Homo sapiens
Biosample type
366
cell line
282
tissue
15
in vitro differentiated cells
11
primary cell
Organ
675
pancreas
674
liver
593
connective tissue
442
adipose tissue
285
epithelium
204
heart
160
brain
139
vasculature
134
blood vessel
116
kidney
76
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
46
limb
36
embryo
24
spleen
18
ureter
8
skeleton
7
eye
1
pericardium
Project
674
AMP
Genome assembly (visualization)
578
hg19
524
GRCh38
Lab
674
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
BIOSAMPLE
ASSAY
674 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
ATAC-seq
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
117
146
2
1
right lobe of liver
10
2
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
hepatic stellate cell
1
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