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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
460
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
166
May, 2020
56
December, 2017
53
November, 2018
21
August, 2017
7
July, 2019
5
December, 2019
5
January, 2019
5
October, 2019
2
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
631
bam
570
bigWig
446
fastq
390
bed narrowPeak
344
bigBed narrowPeak
174
tsv
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
631
Homo sapiens
Biosample type
359
cell line
252
tissue
10
in vitro differentiated cells
10
primary cell
Organ
631
liver
622
pancreas
576
connective tissue
441
adipose tissue
268
epithelium
187
heart
159
vasculature
155
blood vessel
138
brain
129
kidney
100
limb
96
artery
66
bone element
59
blood
59
bodily fluid
51
musculature of body
34
nerve
28
embryo
22
spleen
18
ureter
14
vein
8
skeleton
6
eye
1
pericardium
Project
631
AMP
Genome assembly (visualization)
535
hg19
490
GRCh38
Lab
631
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
631 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
352
5
1
1
tissue
liver
88
147
2
1
right lobe of liver
8
2
1
1
2
in vitro differentiated cells
hepatocyte
10
primary cell
hepatocyte
2
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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