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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
414
ChIP-seq
23
ATAC-seq
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
414
DNA binding
23
DNA accessibility
1
3D chromatin structure
Target of assay
329
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
249
November, 2017
50
December, 2017
48
November, 2018
27
May, 2020
20
May, 2022
19
August, 2017
17
August, 2021
6
October, 2019
2
February, 2021
1
July, 2019
Available data
676
bam
617
bigWig
462
fastq
436
bed narrowPeak
353
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
439
Homo sapiens
Biosample type
309
cell line
111
tissue
14
in vitro differentiated cells
5
primary cell
Organ
439
liver
218
pancreas
174
brain
161
heart
136
epithelium
124
vasculature
122
blood vessel
104
kidney
79
connective tissue
70
artery
56
limb
54
blood
54
bodily fluid
29
eye
28
musculature of body
25
nerve
15
adipose tissue
15
embryo
13
spleen
11
vein
8
bone element
8
skeleton
1
pituitary gland
Project
439
AMP
Genome assembly (visualization)
435
hg19
363
GRCh38
Lab
405
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
439 results
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ChIP-seq
ATAC-seq
Hi-C
pCHi-C
cell line
HepG2
307
1
1
tissue
liver
83
20
right lobe of liver
7
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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