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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
DNase-seq
4
ChIP-seq
1
Hi-C
pCHi-C
Assay category
5
DNA accessibility
4
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
3
August, 2017
3
November, 2018
2
June, 2019
1
August, 2021
1
July, 2019
Available data
631
bam
570
bigWig
446
fastq
390
bed narrowPeak
344
bigBed narrowPeak
172
tsv
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
10
Homo sapiens
Biosample type
6
tissue
4
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
26
connective tissue
23
pancreas
19
epithelium
18
ureter
13
vasculature
11
blood vessel
10
liver
6
adipose tissue
4
artery
4
eye
2
embryo
2
nerve
2
vein
1
spleen
Project
10
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
10
AMP-T2D consortium
assay_title!
pCHi-C
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
10 results
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table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
liver
2
3
right lobe of liver
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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