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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
2
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
3
DNA binding
2
DNA accessibility
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
3
August, 2021
2
June, 2019
1
February, 2021
1
July, 2019
Available data
681
bam
622
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
cell line
Organ
78
kidney
36
limb
34
musculature of body
33
brain
30
heart
21
epithelium
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
7
liver
6
pancreas
4
artery
4
eye
2
nerve
2
vein
1
adipose tissue
Project
7
AMP
Genome assembly (visualization)
7
hg19
5
GRCh38
Lab
7
AMP-T2D consortium
files.file_type!
fastq
BIOSAMPLE
ASSAY
7 results
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ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
cell line
HepG2
1
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