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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
5
DNase-seq
1
pCHi-C
Assay category
5
DNA accessibility
5
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
broad histone mark
1
control
Date released
3
August, 2017
3
November, 2018
2
August, 2021
2
June, 2019
1
February, 2021
Available data
652
bam
592
bigWig
440
fastq
412
bed narrowPeak
337
bigBed narrowPeak
174
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
hdf5
1
vcf
Organism
11
Homo sapiens
Biosample type
6
tissue
4
primary cell
1
cell line
Organ
78
kidney
36
limb
34
musculature of body
32
brain
30
heart
26
connective tissue
22
pancreas
18
epithelium
18
ureter
11
liver
11
vasculature
9
blood vessel
6
adipose tissue
4
artery
4
eye
2
embryo
2
nerve
2
vein
1
spleen
Project
11
AMP
Genome assembly (visualization)
11
hg19
10
GRCh38
Lab
11
AMP-T2D consortium
files.file_type!
hdf5
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
11 results
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Clear Filters
ChIP-seq
DNase-seq
pCHi-C
tissue
liver
3
2
right lobe of liver
1
primary cell
hepatocyte
2
1
hepatic stellate cell
1
cell line
HepG2
1
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