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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
5
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
89
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
58
histone
58
histone modification
40
narrow histone mark
29
control
18
broad histone mark
2
transcription factor
Date released
50
May, 2020
23
August, 2017
12
November, 2017
4
August, 2021
3
November, 2018
2
June, 2019
1
February, 2021
1
July, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
96
Homo sapiens
Biosample type
76
tissue
13
cell line
7
primary cell
Organ
153
brain
96
liver
78
kidney
49
connective tissue
49
musculature of body
48
pancreas
36
heart
36
limb
25
epithelium
19
vasculature
18
ureter
17
blood vessel
14
adipose tissue
10
artery
4
eye
3
embryo
2
nerve
2
vein
1
pituitary gland
1
spleen
Project
96
AMP
Genome assembly (visualization)
52
hg19
39
GRCh38
Lab
96
AMP-T2D consortium
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
tissue
liver
73
2
right lobe of liver
1
cell line
HepG2
12
1
primary cell
hepatocyte
4
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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