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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
DNase-seq
6
ChIP-seq
2
Hi-C
1
pCHi-C
Assay category
14
DNA accessibility
6
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
7
June, 2019
4
October, 2019
3
August, 2017
3
August, 2021
3
November, 2018
2
July, 2019
1
February, 2021
Available data
861
bam
771
bigWig
570
bed narrowPeak
468
fastq
437
bigBed narrowPeak
242
tsv
92
tagAlign
76
bed broadPeak
76
bigBed broadPeak
23
bed bed3+
5
hic
4
bed bedMethyl
4
bedpe bed3+
4
bigBed bedMethyl
4
tar
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
23
Homo sapiens
Biosample type
11
primary cell
11
tissue
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
23
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
23
AMP-T2D consortium
BIOSAMPLE
ASSAY
23 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
+ See 1 more…
tissue
liver
2
3
coronary artery
2
tibial artery
2
ascending aorta
1
right lobe of liver
1
cell line
HepG2
1
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