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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
DNase-seq
6
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
41
DNA accessibility
6
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
34
June, 2019
4
October, 2019
3
August, 2017
3
August, 2021
3
November, 2018
1
February, 2021
1
July, 2019
Available data
795
bam
713
bigWig
533
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
49
Homo sapiens
Biosample type
42
tissue
6
primary cell
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
49
AMP
Genome assembly (visualization)
49
hg19
47
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
49 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
tissue
muscle of arm
17
muscle of leg
13
liver
2
3
tibial artery
2
tibial nerve
2
+ See 3 more…
primary cell
hepatocyte
1
3
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
cell line
HepG2
1
See all biosamples
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