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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
12
DNase-seq
2
Hi-C
1
pCHi-C
Assay category
27
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
transcription factor
8
narrow histone mark
7
broad histone mark
3
control
2
RNA binding protein
Date released
22
August, 2017
6
June, 2019
5
November, 2018
3
August, 2021
2
October, 2019
2
September, 2017
1
February, 2021
1
July, 2019
Available data
1370
bam
1245
bigWig
936
fastq
655
bed narrowPeak
591
tsv
449
bigBed narrowPeak
105
tagAlign
84
bed broadPeak
80
zippedFastqFolder
70
bigBed broadPeak
42
bed bed3+
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
9
hic
6
txt
3
cool
3
tar
2
hdf5
1
bed bed3
1
bedpe
1
csv
1
vcf
Organism
42
Homo sapiens
Biosample type
33
tissue
6
primary cell
3
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
42
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
42
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
21
liver
3
2
body of pancreas
4
pancreas
2
right lobe of liver
1
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
cell line
Panc1
1
1
HepG2
1
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