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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
6
ChIP-seq
2
Hi-C
1
pCHi-C
Assay category
16
DNA accessibility
6
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
9
June, 2019
4
October, 2019
3
August, 2017
3
August, 2021
3
November, 2018
2
July, 2019
1
February, 2021
Available data
866
bam
776
bigWig
574
bed narrowPeak
471
fastq
441
bigBed narrowPeak
242
tsv
92
tagAlign
80
bed broadPeak
80
bigBed broadPeak
25
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tar
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
25
Homo sapiens
Biosample type
13
primary cell
11
tissue
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
25
AMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
25 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
tissue
liver
2
3
coronary artery
2
tibial artery
2
ascending aorta
1
right lobe of liver
1
cell line
HepG2
1
See all biosamples
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