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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
20
ATAC-seq
Assay category
60
DNA binding
20
DNA accessibility
Target of assay
47
transcription factor
13
histone
13
histone modification
11
narrow histone mark
5
RNA binding protein
2
broad histone mark
2
chromatin remodeller
Date released
38
November, 2017
20
May, 2022
14
August, 2021
8
May, 2020
Available data
150
bam
122
fastq
94
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
80
Homo sapiens
Biosample type
52
cell line
28
tissue
Organ
80
liver
27
eye
27
pancreas
15
epithelium
14
musculature of body
4
connective tissue
3
blood vessel
3
vasculature
3
vein
2
adipose tissue
2
brain
1
heart
1
kidney
1
limb
Project
80
AMP
Genome assembly (visualization)
443
hg19
GRCh38
Lab
46
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
ATAC-seq
cell line
HepG2
52
tissue
liver
8
20
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