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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
37
DNase-seq
1
single cell RNA-seq
Assay category
73
DNA binding
37
DNA accessibility
1
Transcription
Target of assay
47
transcription factor
26
histone
26
histone modification
14
narrow histone mark
12
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
32
June, 2019
5
November, 2018
3
October, 2017
1
February, 2021
Available data
924
bam
844
bigWig
644
bed narrowPeak
486
fastq
485
bigBed narrowPeak
204
tagAlign
200
tsv
110
bed broadPeak
101
bigBed broadPeak
48
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
111
Homo sapiens
Biosample type
58
cell line
40
tissue
13
primary cell
Organ
83
kidney
64
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
111
AMP
Genome assembly (visualization)
100
hg19
95
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
single cell RNA-seq
cell line
HepG2
58
tissue
brain
3
14
liver
2
1
caudate nucleus
1
1
cingulate gyrus
2
frontal cortex
2
+ See 13 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 2 more…
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