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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
5
DNase-seq
Assay category
44
DNA binding
5
DNA accessibility
Target of assay
32
transcription factor
12
histone
12
histone modification
7
broad histone mark
5
narrow histone mark
4
chromatin remodeller
3
RNA binding protein
1
other context
1
other post-translational modification
Date released
44
November, 2017
3
November, 2018
2
June, 2019
Available data
531
bam
528
bigWig
367
bed narrowPeak
343
fastq
326
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
49
Homo sapiens
Biosample type
44
cell line
3
tissue
2
primary cell
Organ
78
kidney
49
liver
46
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
14
pancreas
11
blood vessel
9
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
vein
1
spleen
Project
49
AMP
Genome assembly (visualization)
63
hg19
49
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
11
inconsistent control read length
organ_slims!
vein
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
DNase-seq
cell line
HepG2
44
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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