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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
11
DNase-seq
2
ATAC-seq
Assay category
70
DNA binding
13
DNA accessibility
Target of assay
44
transcription factor
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
12
August, 2017
5
June, 2019
5
November, 2018
1
March, 2019
1
October, 2017
1
October, 2019
Available data
1365
bam
1240
bigWig
933
fastq
654
bed narrowPeak
587
tsv
448
bigBed narrowPeak
105
tagAlign
83
bed broadPeak
80
zippedFastqFolder
69
bigBed broadPeak
41
bed bed3+
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
9
hic
6
txt
3
cool
3
tar
2
hdf5
1
bed bed3
1
bedpe
1
csv
1
vcf
Organism
77
Homo sapiens
Biosample type
59
cell line
23
tissue
1
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
vein
3
adipose tissue
2
nerve
1
spleen
Project
83
AMP
Genome assembly (visualization)
80
hg19
62
GRCh38
Lab
81
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
vein
connective tissue
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
58
Panc1
1
tissue
islet of Langerhans
6
2
pancreas
6
2
body of pancreas
4
liver
2
right lobe of liver
1
primary cell
hepatocyte
1
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