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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
13
DNase-seq
Assay category
59
DNA binding
13
DNA accessibility
Target of assay
44
transcription factor
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
7
June, 2019
4
November, 2018
2
August, 2017
1
November, 2020
Available data
1273
bam
1191
bigWig
652
tsv
566
fastq
515
bed narrowPeak
385
bigBed narrowPeak
108
tagAlign
72
bed broadPeak
71
bigBed broadPeak
39
bed bed3+
7
bed bed3
6
bed bedMethyl
6
bigBed bedMethyl
4
bed bedgraph
3
bedpe bed3+
3
tar
2
hdf5
2
hic
1
csv
1
vcf
Organism
72
Homo sapiens
Biosample type
58
cell line
7
primary cell
6
tissue
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
72
AMP
Genome assembly (visualization)
71
hg19
57
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
primary cell
cardiac fibroblast
3
brain pericyte
1
hepatic stellate cell
1
hepatocyte
1
osteoblast
1
tissue
liver
2
omental fat pad
2
right lobe of liver
1
subcutaneous abdominal adipose tissue
1
in vitro differentiated cells
adipocyte
1
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