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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
7
DNase-seq
2
Hi-C
Assay category
58
DNA binding
7
DNA accessibility
2
3D chromatin structure
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
3
November, 2018
2
June, 2019
2
October, 2019
1
August, 2021
1
March, 2020
Available data
723
bam
653
bigWig
468
bed narrowPeak
465
fastq
384
bigBed narrowPeak
179
tsv
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
67
Homo sapiens
Biosample type
59
cell line
6
tissue
2
primary cell
Organ
78
kidney
65
liver
48
musculature of body
47
brain
36
limb
33
heart
28
pancreas
27
epithelium
19
vasculature
18
ureter
15
blood vessel
11
connective tissue
5
vein
4
adipose tissue
4
artery
4
eye
2
nerve
1
spleen
Project
67
AMP
Genome assembly (visualization)
67
hg19
51
GRCh38
Lab
66
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
DNase-seq
Hi-C
cell line
HepG2
58
1
tissue
liver
2
1
tibial nerve
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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