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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
23
DNase-seq
Assay category
58
DNA binding
23
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
20
June, 2019
3
November, 2018
Available data
699
bam
640
bigWig
465
fastq
459
bed narrowPeak
376
bigBed narrowPeak
174
tsv
86
tagAlign
81
bed broadPeak
81
bigBed broadPeak
31
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
81
Homo sapiens
Biosample type
58
cell line
21
tissue
2
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
81
AMP
Genome assembly (visualization)
81
hg19
67
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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