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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
413
ChIP-seq
ATAC-seq
5
DNase-seq
Assay category
413
DNA binding
5
DNA accessibility
Target of assay
329
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
27
May, 2020
17
August, 2017
17
August, 2021
5
October, 2019
2
June, 2019
Available data
678
bam
601
bigWig
464
fastq
418
bed narrowPeak
357
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
418
Homo sapiens
Biosample type
307
cell line
92
tissue
14
in vitro differentiated cells
5
primary cell
Organ
418
liver
203
brain
150
pancreas
119
kidney
115
epithelium
104
heart
87
vasculature
84
limb
83
blood vessel
67
connective tissue
60
musculature of body
54
blood
54
bodily fluid
29
artery
26
nerve
18
ureter
14
embryo
13
spleen
13
vein
9
adipose tissue
6
eye
1
pituitary gland
Project
418
AMP
Genome assembly (visualization)
414
hg19
364
GRCh38
Lab
404
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
418 results
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ChIP-seq
DNase-seq
cell line
HepG2
307
tissue
liver
82
2
right lobe of liver
7
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
hepatic stellate cell
1
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