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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
386
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
386
DNA binding
28
DNA accessibility
Target of assay
302
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
29
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
27
May, 2020
23
December, 2017
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
654
bam
595
bigWig
438
fastq
414
bed narrowPeak
331
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
414
Homo sapiens
Biosample type
308
cell line
86
tissue
14
in vitro differentiated cells
6
primary cell
Organ
414
liver
214
pancreas
203
brain
183
kidney
151
epithelium
151
heart
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
53
blood
53
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
414
AMP
Genome assembly (visualization)
410
hg19
340
GRCh38
Lab
380
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
414 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
tissue
liver
55
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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