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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
460
DNA binding
28
DNA accessibility
Target of assay
329
transcription factor
100
histone modification
99
histone
81
recombinant protein
58
narrow histone mark
56
RNA binding protein
41
broad histone mark
28
control
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
252
November, 2017
51
November, 2018
50
December, 2017
50
May, 2020
38
August, 2017
20
May, 2022
18
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
488
Homo sapiens
Biosample type
311
cell line
156
tissue
14
in vitro differentiated cells
7
primary cell
Organ
488
liver
238
brain
219
pancreas
183
kidney
153
epithelium
153
heart
135
vasculature
131
blood vessel
96
connective tissue
92
limb
76
artery
62
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
20
adipose tissue
18
ureter
14
embryo
14
spleen
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
488
AMP
Genome assembly (visualization)
440
hg19
367
GRCh38
Lab
454
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
488 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
310
1
tissue
liver
125
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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