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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
362
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
362
DNA binding
28
DNA accessibility
Target of assay
329
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
243
November, 2017
51
November, 2018
43
December, 2017
20
May, 2022
13
August, 2017
13
August, 2021
4
October, 2019
2
June, 2019
1
February, 2021
Available data
631
bam
570
bigWig
446
fastq
390
bed narrowPeak
344
bigBed narrowPeak
174
tsv
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
390
Homo sapiens
Biosample type
300
cell line
77
tissue
9
in vitro differentiated cells
4
primary cell
Organ
390
liver
168
kidney
155
pancreas
126
heart
108
vasculature
105
blood vessel
103
epithelium
97
brain
78
limb
68
artery
57
connective tissue
53
blood
53
bodily fluid
49
musculature of body
32
eye
19
nerve
18
ureter
12
spleen
11
adipose tissue
8
bone element
8
skeleton
8
vein
7
embryo
Project
390
AMP
Genome assembly (visualization)
386
hg19
326
GRCh38
Lab
358
AMP-T2D consortium
20
Karen Mohlke, UNC
12
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
390 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
299
1
tissue
liver
48
20
2
right lobe of liver
5
1
1
in vitro differentiated cells
hepatocyte
9
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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