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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
5
DNase-seq
Assay category
58
DNA binding
5
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
3
November, 2018
2
June, 2019
Available data
617
bigWig
585
bam
437
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
63
Homo sapiens
Biosample type
58
cell line
3
tissue
2
primary cell
Organ
71
kidney
63
liver
36
limb
33
musculature of body
28
brain
27
heart
18
ureter
16
epithelium
16
vasculature
12
blood vessel
8
connective tissue
5
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
63
AMP
Genome assembly (visualization)
63
hg19
49
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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