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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
5
DNase-seq
2
RRBS
1
WGBS
Assay category
58
DNA binding
5
DNA accessibility
3
DNA methylation
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
4
November, 2018
2
June, 2019
1
August, 2017
1
July, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
66
Homo sapiens
Biosample type
59
cell line
4
tissue
3
primary cell
Organ
82
kidney
66
liver
40
brain
38
heart
37
limb
37
musculature of body
28
epithelium
19
vasculature
18
ureter
14
blood vessel
13
pancreas
12
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
66
AMP
Genome assembly (visualization)
65
hg19
50
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
DNase-seq
RRBS
WGBS
cell line
HepG2
58
1
tissue
liver
2
1
right lobe of liver
1
primary cell
hepatocyte
1
1
hepatic stellate cell
1
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