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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
Hi-C
1
pCHi-C
Assay category
358
DNA binding
6
DNA accessibility
1
3D chromatin structure
Target of assay
316
transcription factor
81
recombinant protein
55
RNA binding protein
38
histone
38
histone modification
23
chromatin remodeller
22
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
1
control
Date released
249
November, 2017
51
November, 2018
50
December, 2017
9
August, 2017
3
August, 2021
2
June, 2019
1
February, 2021
1
July, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
366
Homo sapiens
Biosample type
294
cell line
52
tissue
14
in vitro differentiated cells
6
primary cell
Organ
366
liver
130
brain
113
pancreas
104
kidney
94
heart
85
vasculature
84
limb
81
blood vessel
81
epithelium
54
blood
54
bodily fluid
48
musculature of body
47
connective tissue
26
nerve
25
artery
18
ureter
14
adipose tissue
13
spleen
13
vein
6
eye
3
embryo
Project
366
AMP
Genome assembly (visualization)
362
hg19
332
GRCh38
Lab
366
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
cell line
HepG2
293
1
tissue
liver
41
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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