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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
5
DNase-seq
2
Hi-C
Assay category
58
DNA binding
5
DNA accessibility
2
3D chromatin structure
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
3
November, 2018
2
June, 2019
1
August, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
65
Homo sapiens
Biosample type
59
cell line
4
tissue
2
primary cell
Organ
79
kidney
65
liver
38
brain
36
limb
35
musculature of body
33
heart
28
epithelium
20
vasculature
18
ureter
16
blood vessel
14
pancreas
9
connective tissue
6
vein
4
artery
4
eye
2
adipose tissue
2
nerve
1
spleen
Project
65
AMP
Genome assembly (visualization)
65
hg19
49
GRCh38
Lab
64
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
DNase-seq
Hi-C
cell line
HepG2
58
1
tissue
liver
2
1
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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