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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
Assay category
100
DNA binding
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
33
August, 2017
27
May, 2020
17
December, 2017
15
November, 2017
5
October, 2019
3
August, 2021
Available data
80
bam
80
bigWig
78
bed narrowPeak
58
tagAlign
45
fastq
35
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
3
bed bed3+
Organism
100
Homo sapiens
Biosample type
70
tissue
15
cell line
12
in vitro differentiated cells
3
primary cell
Organ
187
brain
151
pancreas
100
liver
93
epithelium
78
connective tissue
71
vasculature
70
blood vessel
62
heart
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
100
AMP
Genome assembly (visualization)
80
hg19
70
GRCh38
Lab
100
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
tissue
liver
65
right lobe of liver
5
cell line
HepG2
15
in vitro differentiated cells
hepatocyte
12
primary cell
hepatocyte
3
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