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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
9
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
378
DNA binding
9
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
31
August, 2021
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
362
fastq
361
bam
327
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
10
tsv
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
396
Homo sapiens
Biosample type
396
cell line
361
tissue
15
in vitro differentiated cells
14
primary cell
Organ
396
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
43
blood
43
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
396
AMP
Genome assembly (visualization)
325
hg19
263
GRCh38
Lab
365
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
396 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
378
9
2
2
2
1
1
1
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