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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
Assay category
5
Transcription
4
DNA binding
3
DNA accessibility
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
July, 2019
2
June, 2019
1
October, 2019
Available data
12
bam
10
bigWig
6
bed narrowPeak
5
bed bed3+
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
12
Homo sapiens
Biosample type
401
cell line
353
tissue
15
in vitro differentiated cells
12
primary cell
Organ
393
epithelium
346
pancreas
32
vasculature
31
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
12
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
July, 2019
BIOSAMPLE
ASSAY
12 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
See all biosamples
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