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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
707
ChIP-seq
206
total RNA-seq
38
DNase-seq
27
ATAC-seq
7
Hi-C
7
small RNA-seq
5
WGBS
5
pCHi-C
4
RRBS
4
single cell RNA-seq
2
STARR-seq
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
707
DNA binding
217
Transcription
66
DNA accessibility
9
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Target of assay
308
transcription factor
273
histone modification
272
histone
170
narrow histone mark
126
control
102
broad histone mark
82
recombinant protein
57
RNA binding protein
20
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
194
May, 2020
93
October, 2019
December, 2017
55
November, 2018
54
August, 2017
40
May, 2022
35
August, 2021
32
June, 2019
28
July, 2019
28
May, 2019
16
October, 2017
13
February, 2020
5
December, 2019
5
January, 2019
5
March, 2020
3
February, 2021
1
December, 2018
1
February, 2023
Available data
861
bam
794
bigWig
594
bed narrowPeak
435
bigBed narrowPeak
423
fastq
204
tagAlign
200
tsv
110
bed broadPeak
101
bigBed broadPeak
48
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
1014
Homo sapiens
Biosample type
578
tissue
401
cell line
35
primary cell
Organ
946
pancreas
728
liver
684
connective tissue
505
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1014
AMP
Genome assembly (visualization)
739
hg19
698
GRCh38
Lab
943
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
Audit category:
17
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2017
BIOSAMPLE
ASSAY
1014 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
small RNA-seq
WGBS
pCHi-C
RRBS
single cell RNA-seq
STARR-seq
FAIRE-seq
whole genome sequencing assay
tissue
liver
107
167
2
20
1
1
3
1
1
1
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 79 more…
cell line
HepG2
378
14
1
2
1
2
2
1
primary cell
hepatocyte
4
5
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 6 more…
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