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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
140
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
140
DNA binding
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
88
histone modification
87
histone
53
narrow histone mark
52
control
34
broad histone mark
24
RNA binding protein
16
recombinant protein
8
chromatin remodeller
Date released
194
May, 2020
November, 2017
50
August, 2017
40
May, 2022
30
December, 2017
24
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
281
bam
258
bigWig
174
tsv
96
bed narrowPeak
74
tagAlign
64
fastq
28
bigBed narrowPeak
11
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
379
Homo sapiens
Biosample type
322
tissue
30
cell line
14
primary cell
13
in vitro differentiated cells
Organ
927
pancreas
644
connective tissue
511
epithelium
474
adipose tissue
379
liver
344
kidney
341
heart
223
vasculature
220
blood vessel
195
brain
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
379
AMP
Genome assembly (visualization)
265
hg19
229
GRCh38
Lab
319
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent control read length
month_released!
November, 2017
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
379 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
108
20
2
3
1
1
1
1
1
right lobe of liver
3
8
1
2
1
2
cell line
HepG2
14
7
1
1
2
2
2
1
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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