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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
503
ChIP-seq
189
total RNA-seq
23
ATAC-seq
4
Hi-C
4
WGBS
3
DNase-seq
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
503
DNA binding
193
Transcription
26
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
289
transcription factor
108
control
103
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
193
May, 2020
63
December, 2017
54
August, 2017
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Available data
628
bam
570
bigWig
412
fastq
390
bed narrowPeak
307
bigBed narrowPeak
172
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
9
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
735
Homo sapiens
Biosample type
353
cell line
353
tissue
15
in vitro differentiated cells
14
primary cell
Organ
938
pancreas
735
liver
678
connective tissue
524
epithelium
488
adipose tissue
352
kidney
350
heart
282
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
57
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
19
lung
18
ureter
16
skeleton
15
spleen
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
735
AMP
Genome assembly (visualization)
575
hg19
479
GRCh38
Lab
664
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
735 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
DNase-seq
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
333
14
1
2
2
1
tissue
liver
141
167
20
1
3
1
1
1
right lobe of liver
10
3
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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