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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
30
total RNA-seq
4
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
120
DNA binding
31
Transcription
4
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
transcription factor
3
RNA binding protein
1
recombinant protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
92
bam
71
fastq
44
tagAlign
12
tsv
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
csv
1
vcf
Organism
162
Homo sapiens
Biosample type
93
tissue
67
cell line
1
in vitro differentiated cells
1
primary cell
Organ
284
pancreas
225
kidney
213
epithelium
165
heart
162
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
11
blood
11
bodily fluid
8
embryo
6
spleen
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
162
AMP
Genome assembly (visualization)
hg19
479
GRCh38
Lab
126
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
month_released!
November, 2018
assembly!
hg19
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
53
9
2
1
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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