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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
9
total RNA-seq
2
Hi-C
2
STARR-seq
1
whole genome sequencing assay
Assay category
22
DNA binding
9
Transcription
2
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
17
bed narrowPeak
17
bigWig
9
tsv
4
bam
4
tagAlign
3
bed bed3+
1
bedpe bed3+
1
fastq
1
hic
1
vcf
Organism
36
Homo sapiens
Biosample type
32
cell line
4
primary cell
Organ
130
kidney
92
heart
36
liver
27
blood
27
bodily fluid
8
embryo
7
spleen
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
36
AMP
Genome assembly (visualization)
18
hg19
3
GRCh38
Lab
31
Bing Ren, UCSD
5
AMP-T2D consortium
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
2
1
primary cell
hepatocyte
4
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