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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
10
ChIP-seq
6
total RNA-seq
5
Hi-C
5
small RNA-seq
2
RRBS
2
WGBS
Assay category
35
DNA accessibility
11
Transcription
10
DNA binding
5
3D chromatin structure
4
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
control
Date released
315
November, 2017
194
May, 2020
80
August, 2017
63
December, 2017
53
November, 2018
45
June, 2019
42
May, 2022
35
August, 2021
20
July, 2019
8
March, 2020
7
May, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2020
3
February, 2021
1
December, 2018
1
January, 2018
Available data
57
bam
56
bigWig
43
bed narrowPeak
43
bigBed narrowPeak
36
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
11
tsv
3
bed bedMethyl
3
bigBed bedMethyl
1
hdf5
Organism
65
Homo sapiens
Biosample type
47
tissue
18
primary cell
Organ
92
kidney
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
33
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
65
AMP
Genome assembly (visualization)
57
hg19
55
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
BIOSAMPLE
ASSAY
65 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
RRBS
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
right lobe of liver
2
2
1
gastrocnemius medialis
4
liver
2
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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