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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
4
total RNA-seq
3
small RNA-seq
1
Hi-C
1
RRBS
1
WGBS
Assay category
315
DNA binding
7
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
241
transcription factor
66
recombinant protein
56
control
34
RNA binding protein
15
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
321
bam
315
fastq
276
bigWig
249
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
7
tsv
3
tar
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
325
Homo sapiens
Biosample type
315
cell line
8
tissue
2
primary cell
Organ
325
liver
109
brain
25
heart
19
epithelium
18
connective tissue
18
vasculature
14
blood vessel
12
adipose tissue
11
kidney
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
325
AMP
Genome assembly (visualization)
275
hg19
224
GRCh38
Lab
325
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
325 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
RRBS
WGBS
cell line
HepG2
315
tissue
right lobe of liver
2
2
1
liver
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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