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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
total RNA-seq
7
small RNA-seq
4
Hi-C
3
RRBS
3
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
Assay category
18
Transcription
4
3D chromatin structure
4
DNA methylation
2
DNA accessibility
Target of assay
3
control
Date released
406
November, 2017
194
May, 2020
93
October, 2019
63
December, 2017
55
November, 2018
54
August, 2017
40
May, 2022
35
August, 2021
32
June, 2019
28
July, 2019
28
May, 2019
16
October, 2017
13
February, 2020
5
December, 2019
5
January, 2019
5
March, 2020
3
February, 2021
1
December, 2018
1
February, 2023
Available data
24
bigWig
20
bam
18
tsv
4
bed bed3+
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
1
bed narrowPeak
1
bigBed narrowPeak
Organism
28
Homo sapiens
Biosample type
19
tissue
9
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
28
AMP
Genome assembly (visualization)
26
hg19
19
GRCh38
Lab
28
AMP-T2D consortium
BIOSAMPLE
ASSAY
28 results
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total RNA-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
ATAC-seq
FAIRE-seq
WGBS
tissue
right lobe of liver
2
2
1
frontal cortex
1
1
1
liver
2
1
diencephalon
1
1
temporal lobe
1
1
+ See 4 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 3 more…
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