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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
4
DNA binding
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
July, 2019
2
June, 2019
1
October, 2019
Available data
12
bam
11
bigWig
6
bed bed3+
6
bed narrowPeak
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
14
Homo sapiens
Biosample type
401
cell line
361
tissue
15
in vitro differentiated cells
14
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
14
AMP
Genome assembly (visualization)
13
hg19
11
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood
BIOSAMPLE
ASSAY
14 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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