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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
433
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
WGBS
1
pCHi-C
Assay category
433
DNA binding
162
Transcription
28
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
52
November, 2018
50
December, 2017
20
August, 2017
20
May, 2022
18
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
Available data
622
bigWig
590
bam
441
bed narrowPeak
395
fastq
358
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
630
Homo sapiens
Biosample type
335
cell line
268
tissue
14
in vitro differentiated cells
13
primary cell
Organ
674
pancreas
630
liver
592
connective tissue
adipose tissue
327
epithelium
272
heart
228
brain
211
kidney
202
vasculature
196
blood vessel
128
artery
97
limb
74
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
16
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
630
AMP
Genome assembly (visualization)
625
hg19
531
GRCh38
Lab
595
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
630 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
WGBS
pCHi-C
cell line
HepG2
326
5
1
1
1
1
tissue
liver
83
147
20
2
1
1
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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