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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
155
ChIP-seq
21
ATAC-seq
4
WGBS
3
small RNA-seq
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
155
DNA binding
22
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
6
October, 2019
4
November, 2018
3
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
358
Homo sapiens
Biosample type
358
tissue
343
cell line
15
in vitro differentiated cells
12
primary cell
Organ
545
connective tissue
499
pancreas
adipose tissue
358
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
358
AMP
Genome assembly (visualization)
265
hg19
235
GRCh38
Lab
318
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
adipose tissue
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
358 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
3
1
1
1
1
1
right lobe of liver
3
10
1
1
2
1
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