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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
497
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
497
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
314
transcription factor
101
control
81
recombinant protein
79
histone modification
78
histone
55
RNA binding protein
49
narrow histone mark
29
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
304
November, 2017
193
May, 2020
63
December, 2017
50
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
668
bam
610
bigWig
452
fastq
429
bed narrowPeak
346
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
668
Homo sapiens
Biosample type
353
cell line
288
tissue
15
in vitro differentiated cells
12
primary cell
Organ
668
liver
635
pancreas
576
connective tissue
adipose tissue
296
epithelium
240
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
35
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
668
AMP
Genome assembly (visualization)
573
hg19
526
GRCh38
Lab
668
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent control run_type
organ_slims!
adipose tissue
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
668 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
346
5
1
1
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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