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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
3
DNase-seq
Assay category
58
DNA binding
3
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
3
November, 2018
Available data
669
bam
611
bigWig
465
fastq
435
bed narrowPeak
356
bigBed narrowPeak
169
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
61
Homo sapiens
Biosample type
58
cell line
3
tissue
primary cell
Organ
68
kidney
61
liver
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
5
blood vessel
5
vasculature
4
artery
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
61
AMP
Genome assembly (visualization)
61
hg19
47
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
13
inconsistent control read length
organ_slims!
adrenal gland
biosample_type!
primary cell
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
tissue
liver
2
right lobe of liver
1
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