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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
22
ATAC-seq
20
total RNA-seq
6
DNase-seq
5
WGBS
4
Hi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
28
DNA accessibility
20
Transcription
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
50
May, 2020
40
May, 2022
26
August, 2021
6
October, 2019
February, 2021
3
July, 2019
2
June, 2019
1
December, 2018
1
March, 2020
Available data
680
bam
622
bigWig
465
fastq
440
bed narrowPeak
358
bigBed narrowPeak
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
hdf5
1
vcf
Organism
614
Homo sapiens
Biosample type
384
cell line
206
tissue
15
in vitro differentiated cells
9
primary cell
Organ
614
liver
529
pancreas
368
epithelium
330
kidney
260
brain
211
heart
200
connective tissue
154
vasculature
148
blood vessel
109
limb
90
adipose tissue
87
musculature of body
69
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
9
bone element
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
614
AMP
Genome assembly (visualization)
461
hg19
368
GRCh38
Lab
552
AMP-T2D consortium
40
Karen Mohlke, UNC
22
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
adrenal gland
month_released!
February, 2021
files.file_type!
tsv
BIOSAMPLE
ASSAY
614 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
378
1
2
2
1
tissue
liver
145
20
20
2
3
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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