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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
537
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
537
DNA binding
193
Transcription
29
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
107
control
91
histone modification
90
histone
82
recombinant protein
56
RNA binding protein
55
narrow histone mark
35
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
52
November, 2018
50
August, 2017
48
December, 2017
40
May, 2022
35
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
665
bam
607
bigWig
447
fastq
427
bed narrowPeak
344
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
769
Homo sapiens
Biosample type
400
cell line
356
tissue
in vitro differentiated cells
13
primary cell
Organ
890
pancreas
769
liver
580
connective tissue
484
adipose tissue
447
epithelium
382
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
blood
69
bodily fluid
60
eye
43
nerve
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
769
AMP
Genome assembly (visualization)
609
hg19
516
GRCh38
Lab
698
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood
assay_slims!
DNA methylation
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
769 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
tissue
liver
145
167
20
2
1
1
1
1
right lobe of liver
10
3
1
2
2
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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