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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
550
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
550
DNA binding
193
Transcription
29
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
other post-translational modification
Date released
313
November, 2017
194
May, 2020
63
December, 2017
52
November, 2018
50
August, 2017
40
May, 2022
35
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
678
bam
619
bigWig
460
fastq
439
bed narrowPeak
356
bigBed narrowPeak
174
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
782
Homo sapiens
Biosample type
398
cell line
356
tissue
15
in vitro differentiated cells
13
primary cell
Organ
893
pancreas
782
liver
677
connective tissue
485
adipose tissue
471
epithelium
383
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
22
vein
20
lung
20
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
782
AMP
Genome assembly (visualization)
621
hg19
528
GRCh38
Lab
711
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood
assay_slims!
DNA methylation
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
782 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
376
14
1
2
2
2
1
tissue
liver
145
167
20
2
1
1
1
1
right lobe of liver
10
3
1
2
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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