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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
97
ChIP-seq
22
ATAC-seq
3
WGBS
3
small RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
97
DNA binding
23
DNA accessibility
4
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
55
histone
55
histone modification
39
narrow histone mark
31
control
16
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
40
May, 2022
32
August, 2021
26
August, 2017
9
July, 2019
7
October, 2019
5
December, 2019
3
March, 2020
2
February, 2021
1
February, 2020
Available data
681
bam
622
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
319
Homo sapiens
Biosample type
278
tissue
33
cell line
8
primary cell
Organ
568
connective tissue
469
pancreas
446
adipose tissue
363
heart
319
liver
276
kidney
246
epithelium
232
brain
217
vasculature
216
blood vessel
159
bone element
137
artery
86
limb
60
musculature of body
57
eye
41
nerve
20
lung
20
vein
16
skeleton
10
embryo
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
319
AMP
Genome assembly (visualization)
228
hg19
183
GRCh38
Lab
248
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
organ_slims!
blood
files.file_type!
fastq
bed bed3+
BIOSAMPLE
ASSAY
319 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
STARR-seq
pCHi-C
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
78
20
2
1
1
1
1
right lobe of liver
3
1
2
1
cell line
HepG2
9
18
1
1
2
1
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
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