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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
507
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
WGBS
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
507
DNA binding
188
Transcription
26
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
53
December, 2017
53
November, 2018
40
May, 2022
35
August, 2017
30
August, 2021
8
July, 2019
5
January, 2019
3
February, 2021
3
March, 2020
3
October, 2019
1
December, 2018
1
February, 2020
Available data
641
bam
582
bigWig
440
fastq
407
bed narrowPeak
335
bigBed narrowPeak
169
tsv
65
tagAlign
53
bed broadPeak
53
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
736
Homo sapiens
Biosample type
392
cell line
336
tissue
primary cell
8
in vitro differentiated cells
Organ
736
liver
605
connective tissue
549
pancreas
469
adipose tissue
323
heart
308
kidney
195
brain
163
blood vessel
163
vasculature
158
bone element
125
artery
105
epithelium
88
limb
66
musculature of body
blood
61
bodily fluid
56
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
736
AMP
Genome assembly (visualization)
583
hg19
493
GRCh38
Lab
666
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood
target.investigated_as!
broad histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
736 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
1
2
2
2
1
tissue
liver
123
167
20
3
2
1
1
1
1
1
right lobe of liver
7
3
1
1
2
2
in vitro differentiated cells
hepatocyte
8
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